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The IsoCleft Finder Interface allows you to identify binding site atomic similarities between a query protein and a database of proteins.

Use the form below to run an analysis on a query PDB file.


 If you have any questions about IsoCleft Finder, please, contact Natalja Kurbatova natalja@ebi.ac.uk or Rafael Najmanovich rafael.najmanovich@usherbrooke.ca

 IsoCleft Home

  Related Content

 See the table of each entry of the ICFDB 1.6

 Archive with binding sites for each dataset entry

 List of binding sites for each dataset entry (text format)



Select a query PDB

Enter a PDB code:

Or upload one:

Define the cavity (optional)

Define the cavity around a specific ATOM or HETATM:
Residue Name (eg.: NDP):
Residue Number (eg.: 2001):
Chain (eg.: A):

Compare against which dataset

Dataset:

Parameters


Geometric Distance Threshold:

Minimum cognate similarity of hits:

Show only different PFAM families:

The number of top results:

Get notified when the jobs are done

Your email address: