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  MC-HeatMaps
MC-HeatMaps is a subroutine for the R environment for statistical computing enabling a user to visualize up to three different similarity matrices and a large number of extra matrices using dendrogram partitions into clusters associated to color labels in a single figure.

Below is an example of a figure created with MC-HeatMaps. It contains a dendrogram representing the global sequence similarity, two heatmaps showing binding site sequence and structural similarity as well as two additional color labels representing more information known about the proteins.


  Cran R-project page